from openalea.colzette.geometry import (
phenotype_fababean,
phenotype_rapeseed,
phenotype_camelina,
phenotype_lentil,
vegetative)
[docs]
def generate_population(sowing_pattern,
dict_params,
TLA,
PlantAge,
phenotype,
species='Rapeseed'):
list_of_MTGs = []
list_of_positions = []
nplants = len(sowing_pattern)
for id in range(0, nplants):
xi = sowing_pattern['x'][id] * 100
yi = sowing_pattern['y'][id] * 100
gi = vegetative(DJ=PlantAge, dict_params=dict_params, coord=[(xi, yi, 0)], species=species)
phenotype(gi, TLA, dict_params)
list_of_MTGs.append(gi.copy())
list_of_positions.append((xi, yi, 0))
return list_of_MTGs, list_of_positions
[docs]
def generate_mixture_population(sowing_pattern,
dict_params_brassica,
dict_params_legume,
TLA_brassica,
TLA_legume,
PlantAge_brassica,
PlantAge_legume):
list_of_MTGs = []
list_of_positions = []
nplants = len(sowing_pattern)
for id in range(0, nplants):
# print(id)
xi = sowing_pattern['x'][id] * 100
yi = sowing_pattern['y'][id] * 100
if sowing_pattern['species'][id] == "Fababean":
gi = vegetative(DJ=PlantAge_legume,
dict_params=dict_params_legume,
coord=[(xi, yi, 0)], species="Fababean")
phenotype_fababean(gi,
total_surface=TLA_legume,
dict_params_faba=dict_params_legume)
elif sowing_pattern['species'][id] == "Lentil":
gi = vegetative(DJ=PlantAge_legume,
dict_params=dict_params_legume,
coord=[(xi, yi, 0)], species="Lentil")
phenotype_lentil(gi,
total_surface=TLA_legume,
dict_params_lent=dict_params_legume)
elif sowing_pattern['species'][id] == "Rapeseed":
gi = vegetative(DJ=PlantAge_brassica,
dict_params=dict_params_brassica,
coord=[(xi, yi, 0)], species="Rapeseed")
phenotype_rapeseed(gi,
total_surface=TLA_brassica,
dict_params_rape=dict_params_brassica)
elif sowing_pattern['species'][id] == "Camelina":
gi = vegetative(DJ=PlantAge_brassica,
dict_params=dict_params_brassica,
coord=[(xi, yi, 0)], species="Camelina")
phenotype_camelina(gi,
total_surface=TLA_brassica,
dict_params_came=dict_params_brassica)
list_of_MTGs.append(gi.copy())
list_of_positions.append((xi, yi, 0))
return list_of_MTGs, list_of_positions
